-------------------------------------------------------------------------------- Domain name : PF00690.18_Cation_ATPase_N Domain size : 58 Domain Description : Cation transporter/ATPase, N-terminus Domain gathering score : 18.8 Domain trusted cutoff : 18.8 Domain architecture : non-TM/SP [1 84], TM [85 107] -------------------------------------------------------------------------------- Example 1 gi|146295547|ref|YP_001179318.1| 1A family penicillin-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903]gi|145409123|gb|ABP66127.1| penicillin-binding protein, 1A family [Caldicellulosiruptor saccharolyticus DSM 8903] 838 (length) 12 48 .. (wrt seq) 66 107 .] (wrt HMM) No.of residues in non-TM/SP region : 19 [23%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- Transgly Transglycosylase 303.3 5.1e-88 1 Transpeptidase Penicillin binding protein transpepti 169.9 7.5e-48 1 Cation_ATPase_N Cation transporter/ATPase, N-terminus 18.9 0.00011 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cation_ATPase_N 1/1 12 48 .. 49 87 .] 18.9 0.00011 Transgly 1/1 75 243 .. 1 173 [] 303.3 5.1e-88 Transpeptidase 1/1 366 646 .. 1 350 [] 169.9 7.5e-48 Alignments of top-scoring domains: Cation_ATPase_N: domain 1 of 1, from 12 to 48: score 18.9, E = 0.00011 CS -.----SSHHHHTHHHHHHHHHHHHHHHHHHT--CCHHH *->ppekktslwlkfLeQFkdplvllLlaAAiiSALdfvlgg<-* +++kk s++ +f++ F l++l +a+A+++ + + +g gi|1462955 12 KKPKKQSPFRIFIRSFLKTLLILIIASAVVA--IGAGFG 48 Transgly: domain 1 of 1, from 75 to 243: score 303.3, E = 5.1e-88 *->sriydrnGkllaelasdeenRewvpldeippnLinAviAsEDrrFYe +++yd G+ +a l +enR+ vp+++ip+nLinA++A+ED+rF+ gi|1462955 75 TIVYDQSGNEIARLHG-NENRIRVPYSKIPKNLINAFVAIEDERFWQ 120 HhGvDpkgilRAllnnltgggrvqGGSTITQQlAKNlfLsngersllRKl H+G+D+k+i +A++nn+++ + ++G+STITQQl++N +L+ e+s++RK+ gi|1462955 121 HNGIDIKRIIGAIFNNIKSRSLSEGASTITQQLVRNKLLTF-EKSFKRKI 169 kEallAlklErrySKdeILeaYLNivyfGngQgiyGieAAAqaYFGKdak +E +lA++lE+r++K++I+e YLN++ +G g+yG+eAAA++YFGKd++ gi|1462955 170 QEQYLAIQLEKRWTKEQIMEEYLNTINLGS--GAYGVEAAAYTYFGKDVS 217 dLtlaEaAlLAgllpnPsrynPyrnp<-* +LtlaE+Al+Ag+ +nPs+ynPy+ p gi|1462955 218 QLTLAECALIAGITQNPSYYNPYVFP 243 Transpeptidase: domain 1 of 1, from 366 to 646: score 169.9, E = 7.5e-48 CS EEEEEEETTT-BEEEEEEES---TTT..........-TT--TT---- *->gsaVvldpkTGevLAmaskpsydpnrfvggsSdeekklgnddkeplr ++aV++d TG+v ++ +++ n + l+ gi|1462955 366 AAAVLIDFSTGAVKGIMGGR---GNL---------------KGVRLL 394 CS -TTTS--B--GGGGHHHHH.HHHHHCT---TT-EEE-S-.EEETTEEE-- nravqdtyePGSTfKpftayaaalenGilkpeetfddwgglqvggytikd nra+ ++ +PGS +Kp++ ya alenG +++dd + + vggyt ++ gi|1462955 395 NRATMSVRQPGSSIKPIADYALALENG-YTAATIIDDVP-FSVGGYTPRN 442 CS HHHH TS TSS-EEEHHHHHHCT-HHHHHHH.HHHH-HH........ wnqd.rl....tgsgtitlrealeySsNwyfvklaaqklGkdYPhmLtda w++ +++ ++++++g +t+real++S N++ vk+ a++lG + gi|1462955 443 WYKSnVVagkrGYKGLMTVREALQWSANVPAVKV-AYNLGIQ-------- 483 CS .H.HHHHHHHTTTTS----SSSS----B---SSC...CHHHHGGGT-S.- mkvlrdylkkfGlGnktgiglpgEsaGilpprerwqkidgattawGqgsl + lk+fG+ + q+ ++++ a+G gi|1462955 484 -N-VYRNLKRFGFTTLAP-----------------QDMNSLSIAIGGFTY 514 CS BB-HHHHHHHHHHHHTTT-EE--B-EEEEEETTTTEE.....EE----EE tiTPlqqaqayatiaNnGklvpPhlvksivdpngkkllGlidsvdppvlg + P+++ a+a+ aN+G++ +P+++ +i+d+ng +l + ++ + gi|1462955 515 GVKPIELTAAFAAVANGGIYIKPYFITKIEDKNGVTL------FERTPYK 558 CS E--S-HHHHHHHHHHHHHHHH-TTTTSSBSS-BTTB--EEEEEEEE-B-T klpiskstaekvrdmlklvvedgsggtgkaaavpGykvaGKTGTAqvagk + ++++++a+ ++++l++vv++ t y+vaGKTGT+ gi|1462955 559 RKVMDEKNAYILTNILQSVVTAR--ITV--GVRFSYPVAGKTGTTD---- 600 CS TTSSB-SSSSEEEEEEEE.ESTTS-SEEEEEEEE.....S-SS--HHH ggykdnggttyngWFvGytapadnpkyafavlidddspkgdggaggkv.. ++kd+ WFvGy +p+ya++v++ +++ + ++ + ++ gi|1462955 601 -DSKDR-------WFVGY-----TPNYALGVWVG-EDKPVALNYLYGTnp 636 CS HHHHHHHHHH aapifkdime<-* a +ifk im+ gi|1462955 637 ALKIFKGIMD 646