-------------------------------------------------------------------------------- Domain name : PF00822.12_PMP22_Claudin Domain size : 198 Domain Description : PMP-22/EMP/MP20/Claudin family Domain gathering score : -20.0000 Domain trusted cutoff : -20.0000 Domain architecture : TM/SP [1 24; 91 198], non-TM/SP [25 90] -------------------------------------------------------------------------------- Scores for complete sequences (score includes all domains): Sequence Description Score E-value N -------- ----------- ----- ------- --- gi|21687006|ref|NP_542375.1| calcium channel, -8.7 0.083 1 gi|21687012|ref|NP_542424.1| calcium channel, -8.7 0.083 1 gi|73947815|ref|XP_533601.2| PREDICTED: simil -8.9 0.085 1 Parsed for domains: Sequence Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- gi|21687006|ref|NP_542375.1| 1/1 7 196 .. 1 184 [] -8.7 0.083 gi|21687012|ref|NP_542424.1| 1/1 7 196 .. 1 184 [] -8.7 0.083 gi|73947815|ref|XP_533601.2| 1/1 61 206 .. 1 184 [] -8.9 0.085 Alignments of top-scoring domains: gi|21687006|ref|NP_542375.1|: domain 1 of 1, from 7 to 196: score -8.7, E = 0.083 *->mlllLlgiivlhigwviLLfvsTiPtnqWkvsdyaGDniITAa.... ++l Ll+ +v+++ +++LL ++ t++W ++ ++G iI +++++ gi|2168700 7 KALTLLS-SVFAVCGLGLLGIAVS-TDYW-LYLEEG--IILPQnqst 48 ....aasagLWrnC...............ttqsctgqiscksfdSvlsln + + + gLWr C ++++++ + + + ++ ++s+++ ++ gi|2168700 49 evkmSLHSGLWRVCflageergrcftieyVMPMNSQMTSEST----VNVL 94 saLqAvqALMiLSiiLgiislivfvfQLftmkkGgrfflkKariAmltGI +++ + +S+ + +i++i++ ++ + + f+ +GI gi|2168700 95 KMIRSATPFPLVSLFFMFIGFILSNIGHIRPHRTILAFV--------SGI 136 iflvsgLCvlvAasIYTnriveefgnpltpYyvnqkyefGyayiLaWvAf +f++sgL v++ +Y + i +e n+ + + y +G++++ a + f gi|2168700 137 FFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFAFAAISF 186 aLtfisGvlY<-* +Lt +Gv+ gi|2168700 187 LLTESAGVMS 196 gi|21687012|ref|NP_542424.1|: domain 1 of 1, from 7 to 196: score -8.7, E = 0.083 *->mlllLlgiivlhigwviLLfvsTiPtnqWkvsdyaGDniITAa.... ++l Ll+ +v+++ +++LL ++ t++W ++ ++G iI +++++ gi|2168701 7 KALTLLS-SVFAVCGLGLLGIAVS-TDYW-LYLEEG--IILPQnqst 48 ....aasagLWrnC...............ttqsctgqiscksfdSvlsln + + + gLWr C ++++++ + + + ++ ++s+++ ++ gi|2168701 49 evkmSLHSGLWRVCflageergrcftieyVMPMNSQMTSEST----VNVL 94 saLqAvqALMiLSiiLgiislivfvfQLftmkkGgrfflkKariAmltGI +++ + +S+ + +i++i++ ++ + + f+ +GI gi|2168701 95 KMIRSATPFPLVSLFFMFIGFILSNIGHIRPHRTILAFV--------SGI 136 iflvsgLCvlvAasIYTnriveefgnpltpYyvnqkyefGyayiLaWvAf +f++sgL v++ +Y + i +e n+ + + y +G++++ a + f gi|2168701 137 FFILSGLSLVVGLVLYISSINDEMLNRTKDAETYFNYKYGWSFAFAAISF 186 aLtfisGvlY<-* +Lt +Gv+ gi|2168701 187 LLTESAGVMS 196 gi|73947815|ref|XP_533601.2|: domain 1 of 1, from 61 to 206: score -8.9, E = 0.085 *->mlllLlgiivlhigwviLLfvsTiPtnqWkvsdyaGDniITAaaasa +l Ll +++ ++ ++ + sT W v+ + + + gi|7394781 61 RSLALLTGSLGLVSIL--IALSTD---FWFVAMGPS------FTFHS 96 gLWrnCttqsctgqiscksfdSvlslnsaLqAvqALMiLSiiLgiisliv gLW ++++ + ++ a+q+ +L +LS++ ++i l++ gi|7394781 97 GLWPKGVYNK---VADYIR---------ATQSLTILASLSVLVSVIFLVL 134 fvfQLftmkkGgrfflkKariAmltGIiflvsgLCvlvAasIYTnrivee + + L + gr + + + +++gL+++vA YT+ + + gi|7394781 135 SYIPLLSLPGHGRLIS---------SVTAFAAGLFAMVAMVVYTSERWNQ 175 fgnpltpYyvnqkyefGyayiLaWvAfaLtfisGvlY<-* p + f++++ L+Wv L + G l gi|7394781 176 PHSPQ------VQTFFSWSFYLGWVSTVLLLCTGSLS 206