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Domain name : PF01001.11_HCV_NS4b
Domain size : 38
Domain Description : Hepatitis C virus non-structural protein NS4b
Domain gathering score : 14.5
Domain trusted cutoff : 15.1
Domain architecture : non-TM/SP [1 124], TM [125 199]
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Example 1
gi|189206992|ref|XP_001939830.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975923|gb|EDU42549.1| conserved hypothetical protein [Pyrenophora tritici-repentis Pt-1C-BFP] 440 (length) 178 211 .. (wrt seq) 164 199 .] (wrt HMM) 
No.of residues in non-TM/SP region : 0 [100%(over non-TM/SP length)]

Scores for sequence family classification:
Model        Description                                Score    E-value  N
--------     -----------                                -----    ------- ---
MFS_1           Major Facilitator Superfamily            79.3    1.9e-21   1
HCV_NS4b        Hepatitis C virus non-structural prot    14.6    4.8e-05   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
MFS_1             1/1      49   388 ..     1   390 []    79.3  1.9e-21
HCV_NS4b          1/1     178   211 ..   164   199 .]    14.6  4.8e-05

Alignments of top-scoring domains:
MFS_1: domain 1 of 1, from 49 to 388: score 79.3, E = 1.9e-21
                   *->lflaaflaglgrsllgpalpylasssledsslg.qtd.llspteigl
                       +l++f+ ++++++l  a+  ++    +   + +   ++ +++ i++
  gi|1892069    49    QVLGGFILFANSWGLPNAFGVFQ----TY--YVdTLMpGQDAASIAW 89   

                   lltafalgyalaqplaGrlsDrfGrrtyirlkpvlllglllfalgsllla
                   ++++  +++ ++ +++G l Dr   +       ++ +g++l +lg+ll+ 
  gi|1892069    90 IGSIQLFFTTIGCLPGGVLLDRGYLK---S---IIAVGTFLEILGLLLTS 133  

                   fasstslwllliarvllqGlgaglllpaaaaliadwfppeergralgivs
                   f++  ++w++++a  +++G+g+gl++ +  a++a  f++++r  a+g++s
  gi|1892069   134 FFH--GFWPIFFAQGVCMGIGSGLMALVPVAVLAM-FFEKKRMVATGLAS 180  

                   agfglGaalggpllggllaalgwwwssgtfWraaFlllailallaavlll
                   +g +++++   + + +l++++g+         +a  ++a+++ll  ++  
  gi|1892069   181 TGASVAGIAYTLSMRSLFTSVGF--------AWAVRIFAAIILLTNAV-- 220  

                   vlfllpeppakksgkpdeeeagialr.lll.p.llllllallllllafla
                   ++ + +   +             ++ + +   ++  l+ a +++++++++
  gi|1892069   221 AFVVMRLQLQYG-----------SKGsSFGfHhFKDLPYAVFVVAFTLFV 259  

                   lltflplylllpllls.saglslsalaagllllalglggllgglllggrl
                    +tf+p+++ + +    s+  +++   ++l   ++ ++ ++g+++   ++
  gi|1892069   260 ASTFVPFFFIQEYAIKlSVEKDMA--FNLLS--IMNAANIFGRFVP-NFV 304  

                   sdrlgrglarkgeaeaerrrllllgllllalgllllafapslsialllla
                   +dr+g              ++l+   ++ +++l  l+++ ++    l+++
  gi|1892069   305 ADRYG------------GVNTLFPLTIACIITLCTLPLVRDFN--GLVAI 340  

                   lvllGlgfggvfpllnalasdlappeaqerGtvsGlyntagslggalgp<
                   ++ +G+  ggv ++  ++++dl+p+ + e G+ +Gl++++ ++gg+lg  
  gi|1892069   341 SIAYGFLSGGVIIIPGPTITDLTPNKS-EIGVRLGLAYLVAAFGGLLGN  388  

                   -*
                     
  gi|1892069     -    -    

HCV_NS4b: domain 1 of 1, from 178 to 211: score 14.6, E = 4.8e-05
                   *->llSPGAsVvGValaliLrshkgpgeGavqWmNRLLt<-*
                      l+S GAsV+G+a  l +rs+ +  +++  W  R+ +   
  gi|1892069   178    LASTGASVAGIAYTLSMRSLFT--SVGFAWAVRIFA    211