-------------------------------------------------------------------------------- Domain name : PF01105.16_EMP24_GP25L Domain size : 167 Domain Description : emp24/gp25L/p24 family/GOLD Domain gathering score : -16.0000 Domain trusted cutoff : -15.4000 Domain architecture : non-TM/SP [1 314], TM [315 346] -------------------------------------------------------------------------------- Example 1 gi|147773092|emb|CAN62859.1| hypothetical protein [Vitis vinifera] 1181 (length) 1018 1173 .. (wrt seq) 1 167 [] (wrt HMM) No.of residues in non-TM/SP region : 274 [87%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- Cellulose_synt Cellulose synthase 246.8 5.2e-71 1 EMP24_GP25L emp24/gp25L/p24 family/GOLD 56.7 9e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cellulose_synt 1/1 295 989 .. 1 898 [] 246.8 5.2e-71 EMP24_GP25L 1/1 1018 1173 .. 1 167 [] 56.7 9e-14 Alignments of top-scoring domains: Cellulose_synt: domain 1 of 1, from 295 to 989: score 246.8, E = 5.2e-71 *->pLsrkvpIpsskispYRllIvlRLviLclFlkyRitnPvedAlwLWl vp+ ++ + v+ + i P ed w W gi|1477730 295 TVMLHVPVYEALFVRNDKGQIPSSVMFKV-----IHIPTEDGRWGWI 336 lSviCEiWFAlSWiLDqlPKlfPinReTyLdrLslrferegesnPtGrsd E+WF+l W+ q +++Pi R+T drLs+r+e+ gi|1477730 337 GLLLAELWFGLYWLXTQASRWNPIYRSTFKDRLSQRYEK----------X 376 LagvDvFVSTvDPlKEPPLvTANTvLSILAvDYPVeKvScYvSDDGaalL L++vD+FV T+DP EPP+ NTvLS++A DYP eK+ +Y+SDD ++ L gi|1477730 377 LPAVDIFVCTADPVIEPPIMVVNTVLSVMAYDYPQEKLGVYLSDDAGSEL 426 tFEaLaetaeFArkWVPFCkKhnIEPRaPesYFsqKiDylKdKvrpdFVk tF aL e++ F + W+P+CkK++IEPR P +YFs+ l d + k gi|1477730 427 TFYALLEASHFSKHWIPYCKKFKIEPRSPAVYFSL-TSHLHDADQA---K 472 eRRamKReYeEFKVRINaLvakaqkrsdafnareelkalkkarvkvPeeg e + YeE K RI+ k + +Pee gi|1477730 473 ELEXIQKLYEEMKDRIET-ATKLGR--------------------IPEEV 501 WvMqDG.TpWPGtWaesaenntrDHpGmiQVfLg..psgaedveGnegee + q G + W ++ DH ++Q++ ++ ++a dveG++ gi|1477730 502 LMEQKGfSQWDS------FSSRHDHDTILQILIDgxDPNAMDVEGSK--- 542 ralDltdvDirLPrLVYVSREKRPGydHhKKAGAmNALVRvSAvLtNgpF LP LVY REKRP H+ KAGAmNAL A+ t gi|1477730 543 -----------LPTLVYLAREKRPKHPHNFKAGAMNAL---TAICTXTIH 578 iLNLDCDHYinNSkAirEamCFlmDpqlGkkvcYVQFPQRFdGIDpsDRY i +r+a+CF mD + G+++++VQ+PQ F+ I ++ Y gi|1477730 579 I-------------PFRDALCFFMDEEKGQEIAFVQYPQNFENITKNELY 615 ANrNtVFFDiNmrgLDGiqGPvYVGTGcvFrRqALYGydPPkkekrkket + V + gLDG GP+Y+GTGc rR L G gi|1477730 616 SSSLRVISEVEFHGLDGYGGPMYIGTGCFHRRDTLCG------------- 652 idcwpkwiicscCfgrrkkkkskkkkkkakeakkdakkkeseaeifnled rk +k+ +++ gi|1477730 653 ----------------RKFSKDYRNEW----------------------- 663 ideglegytdeeeksslmsqksleKrFGqSsvfvaStlveefqGrpladh Kr +S++ ee gi|1477730 664 ------------------------KR--------ESIKTEE--------- 672 ksvkngrPpGaggvprsalpaalvkEAI.hVISCgYEdKTeWGkeiGWIY a ++E+ ++ SC YE T+WG+e G Y gi|1477730 673 -------------------SAHELQESLkNLASCRYEGDTQWGNEMGLKY 703 GSVTEDilTGFkMHcrGWrSiYCvpkrdAFkGsAPINLsDRLhQVLRWAl G ED++TG c GW+S+Y p AF G AP L L Q RW gi|1477730 704 GCPVEDVITGLSIQCLGWKSVYLNPAXKAFLGVAPTTLEQTLVQHKRWSE 753 GSVEIffSrhcplwygygGgrLKfLeRlAYiNtivYPfTSipLiaYCtLP G I++S+ +p wyg G r+ l Y +P S+ + YC++P gi|1477730 754 GDLQILLSKYSPAWYG-LG-RISPGLILGYCTYCLWPLNSLATLSYCIVP 801 AicLltgkFIvptlsnlasiyllllflsiivtavLElrWSGvsieewWRN + Ll g p++s + + + l+ ++ E WSG ++ wW gi|1477730 802 SLYLLHGIPLFPQVSSPWFLPFAYVILAKYSGSLAEFLWSGGTLLGWWND 851 EQFWvIGGvSAHLfAVfQGlLKVlaGidtnFTvTSKasdddeddeF.aeL W+ + + LfA + +L++l +t+F +T+K +d+d + +++e+ gi|1477730 852 QRIWLFKRTTSYLFAFMDTILRLLGFSETSFILTAKVADEDVSQRYeGEM 901 YifKWTtLlIPPt.tllivNlvgivaGvsrainsgypsWgpLfGklFFaf f ++ + + tl ++Nl +v Gv + + ++ + ++ a+ gi|1477730 902 MEFGGSSPMFTILaTLAMLNLFCVV-GVVKKVGLDMEVYKTMALQILLAV 950 WVivHLYPFlKGLmGRq..nrtPTIVvvWSvLLAsifSLLWvrInPfvsk ++ +P GL R++++++P + P + gi|1477730 951 VLLLINWPLYQGLFLRKdnGKMP------------------CKARP--RE 980 tdgpslele<-* ++++++++ gi|1477730 981 SNKTDISSS 989 EMP24_GP25L: domain 1 of 1, from 1018 to 1173: score 56.7, E = 9e-14 *->altfelppgekeCFyEelkkkgtkvtgsYqVi............... +++f ++ e CF +++++g++++ s+ Vi+ + + + ++++ + gi|1477730 1018 GIRFVIDREE--CFSHNVEYEGDTIHASFVVIkvdaswhynkdgvdl 1062 ........didvtvkdPfdngkrvlykkerkseGdftFtalesGeYkfCF + + +++ +vk+P+ g+ + +++++ ++ +f+F a+e+G + fCF gi|1477730 1063 vwyfqydyTLSNKVKGPS--GNQIQDYRDK-TSEKFEFMAHEKGLHXFCF 1109 sNefsktfssktVsfdid.....kekldpalessirkLeeqlnsikreQk +N+++ ++ t++fd+ +++ +++ gi|1477730 1110 TNKSP---YHETIDFDVYtghfaYYDQHA--------------------- 1135 ylrekREarhrntsEsTNsRVvwWSiiqllvlvgvsvfQvyyLKrFFe<- k ++++ + +R v+ ++ ++++l+g+s++Qvy L+r+Fe gi|1477730 1136 ----K------DVNDAMSRRAVYKAFYESAALIGASILQVYLLRRLFE 1173 * gi|1477730 - -