-------------------------------------------------------------------------------- Domain name : PF01569.13_PAP2 Domain size : 177 Domain Description : PAP2 superfamily Domain gathering score : 8.3000 Domain trusted cutoff : 8.4000 Domain architecture : non-TM/SP [1 199], TM [200 261] -------------------------------------------------------------------------------- Example 1 gi|118103025|ref|XP_418136.2| PREDICTED: similar to Aoc2 protein [Gallus gallus] 1153 (length) 859 1000 .. (wrt seq) 1 177 [] (wrt HMM) No.of residues in non-TM/SP region : 143 [72%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- Cu_amine_oxid Copper amine oxidase, enzyme domain 564.9 9.2e-167 1 Cu_amine_oxidN2 Copper amine oxidase, N2 domain 57.4 5.4e-14 1 PAP2 PAP2 superfamily 54.1 5.3e-13 1 Cu_amine_oxidN3 Copper amine oxidase, N3 domain 52.9 1.3e-12 1 DUF1965 Domain of unknown function (DUF1965) -8.7 0.051 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Cu_amine_oxid 1/1 301 714 .. 1 449 [] 564.9 9.2e-167 Cu_amine_oxidN2 1/1 58 144 .. 1 91 [] 57.4 5.4e-14 PAP2 1/1 859 1000 .. 1 177 [] 54.1 5.3e-13 Cu_amine_oxidN3 1/1 161 258 .. 1 111 [] 52.9 1.3e-12 DUF1965 1/1 226 290 .. 1 77 [] -8.7 0.051 Alignments of top-scoring domains: Cu_amine_oxid: domain 1 of 1, from 301 to 714: score 564.9, E = 9.2e-167 CS S---EEEEE-TT-SSEEEETTTEEEETTEEEEEEEETTTEEEEEEEE *->pdlkPLqitQPeGPsFrvtGgnlVeWanWsFhvGfdpReGlvIsdVr p PLq++ P+GP+++v++ n+V++++Ws +G++p G++++d+r gi|1181030 301 P--GPLQFE-PQGPRYSVRD-NRVTYQGWSIAFGMNPNTGPRLFDIR 343 CS EEETTEEEEEEEEEEEEEEEEEB-SSSTTTTTEEEEHHHHCTTTTTBB-S fnDegtkRpVmYrgSlsEmvVPYGDpspawyrKnYfDsGEyGlGkmanpL f++e +++Y++Sl+E+ ++YG++ p+ + ++Y+D ++G+G+ a +L gi|1181030 344 FRGE----RIIYELSLQEALALYGSNCPGGMSTRYLDG-SFGIGRFAYEL 388 CS TTTTSSTTSEEEEEE.EEESTTS-EEEEEEEEEEEEEEEEEEEEE EEST spGcDCpgnatYlDaFhfadadGnPitipNAICvFEedaGlilwK.Hsdl ++G+DCp+ atY+D h+++++ +Pit N +C+FE d++l+l+++ sd gi|1181030 389 VRGVDCPYLATYVDR-HYLSESDVPITNQNSLCIFEHDTSLPLRRhFSDA 437 CS TCTT.ECEEEEEEEEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEEEE- rqnneginevrrsrkLVVrfisTVgNYDYifdWiFytdGaIeaevkATGI + +++++r+ +LV+r +sT+ NYDY++d+ Fy +Ga e++v+ATG+ gi|1181030 438 HS---LYYGGLRKNTLVIRAVSTLINYDYVWDFMFYSNGAVEVRVHATGY 484 CS -EEEEESTTSTSTTHCCCTTTEEEEETTEEEEEEEEEEEEEEEETTTSSE LnvkglkygnkDeigeeeeryGtlvsenvigpvHqHlfhfRlDldiDGlk ++ +l ++ ++ yG+ v ++++g+ H H +h+++DldiDG gi|1181030 485 ISSSFLHDQ--------GTNYGNKVGPHTLGTMHLHHIHYKVDLDIDGQL 526 CS EEEEEEEEEEEEEECCTTTSTTSEEEEEEEEEEEEEBBHHHHEETTSGGG NsvvavdlKkvrvpmGapgnprgnalkalQlkrkllktEkdAafkldsat Ns++ d+ ++m +p++p++ al+++ l r+ l++E +Aaf l+ ++ gi|1181030 527 NSLESHDM--GYQTMRVPWSPEN-ALQQPYLRRERLERENEAAFPLNASL 573 CS TEEEEEEEEEEETTTS-CEEEEEEEEESBBSS-STTTSHHHHTHHHHHCG pRtwlivNpnkkNrvGgnPvGYkLipgstatllldpdssparDWiYHRaa pR +l ++ +k Nr+G + ++Y+ + s++ + l+ s++++ +++ gi|1181030 574 PR-YLSFTGPKPNRWG-HLRSYRVQVVSFPGEHLPTSSPMEK-----AIS 616 CS GGGSSEEEEE-TTT--STTTSS-TTTTSSSSS.SSSSHHHHHTT-CBSSS FarnqLwVTpYkeeElyagGdYvnQsqgDgpWaPTdgLadwikrnrsIen + r+ L+VT++keeE+ ++++Y +q+D pW+PT+++ad+i+ +++I n gi|1181030 617 WGRYKLAVTRRKEEEPTSTSVY---NQND-PWTPTVTFADFIN-DETIAN 661 CS EEEEEEEEEEEEE--GGGGSSB.SEEEEEEEEEEEECSSSSSGTTTTCCS tDiVvWhTfGftHvPraEDwPNTiMPvesvgFlLrPhNFFdenPsLdvpp +D+V+W +Gf+HvP+aED+PNT+++++ vgF+LrP+N Fde+PsL++p+ gi|1181030 662 EDLVAWISVGFLHVPHAEDIPNTVTVGNGVGFFLRPYNYFDEDPSLYSPD 711 CS SEE sve<-* ++ gi|1181030 712 GIY 714 Cu_amine_oxidN2: domain 1 of 1, from 58 to 144: score 57.4, E = 5.4e-14 CS CTTSHHHHHHHHHHHHHHHHCT.TTTTTEEEEEEEEE--HHHHHHHH *->HPLdpLtaeEinkvrtILkssallagkstrfhsveLlEPdKkaVlqw ++L ++ + L ++a +++++++++sv++++P+K++Vl++ gi|1181030 58 EELAQVVQYLRGSLGVPLADAARAKPSDNCIASVDVQLPAKAEVLRF 104 CS HHSCSSSSSS-EEEEEEEEETTSSSEEEEEEETTTTEEEEEEEE lekggplvappRkArVvaldgaqtRshElvVDLttGkvvswril<-* l+ gg ppR+A +v+++gaq+ ++v++ +G+++ + ++ gi|1181030 105 LDAGGAR--PPREALAVLYFGAQA--EPNVTEYVVGPLPAPTYH 144 PAP2: domain 1 of 1, from 859 to 1000: score 54.1, E = 5.3e-13 CS CCHHHHHHHHHHHHHHHHHHHHH CC-B--..HHHHHHHHHHHTT-G *->aalalllalvaslllnglaylKl.lfgrpRApPhflavcqpdwgdst ++ l++++v++ +ln + +K+ lfg+ R P gi|1181030 859 VGIRLIWVAVIGDWLNLV--FKWiLFGE-R--P-------------- 886 CS GGHHHHHHCHHCHCCCHHCCHH HHT-- SS-B--TTCSSTTBS-SS-SS csdlwyeellgyefycmagspg.ldrid.lfgsvlltsafalvseagpSF +++ +++++ +++s + ++f+l++e+gp+ gi|1181030 887 -------------------YWWvHETDYySNASAPAIQQFPLTCETGPG- 916 CS S-HHHHHHHHHHHHHHHHCTT SSCCC- CGS-E PSGHaafaaafalflalylpr.................rlsklg.rllrl + pr+++++ + ++++ + ++ r l+ gi|1181030 917 -----------------RDPRsdksgwhfvqgprilvlMELSTPcRILWA 949 CS ECHHHHCCHHHHHHHHHHHCTSS-HHHHCHHHCHCHCCCCHCHCHCCCGB llgllllllallvglSRvylgvHypsDVlaGallGaliaalvllfvrrll +l+ ++++ ++v+lSR++ +H+p++V+aG++ G+++a+ +++++ + gi|1181030 950 MLWTGFWAVQVCVCLSRIFIAAHFPHQVIAGVISGMAVAETFQHIHSIYH 999 CS - d<-* + gi|1181030 1000 A 1000 Cu_amine_oxidN3: domain 1 of 1, from 161 to 258: score 52.9, E = 1.3e-12 CS S---HHHHHHHHHHHHHTTGHHHHHHHHHTT.TCCGGGGEEEEEEE- *->PpvtleEfasaeevplrrtdPefiealkkRGflvnglsdvvciPwtv + vt +E+a + e++ +++ + ++l++++ + ++ ++++t gi|1181030 161 RAVTGAEYAAINELIQ-KELRKAPRFLAACC--AS--DGTDLATITT 202 CS SSSSTST.GTTS-EEEEEEEE-SSTT...S-GGGSEECTEEEEEETTTTE GwfGeasleeGrRllkalcfyrdgtvsPmdnyyahPieGLeilvDldakk +++G +s G+R++++++f+ + ++ +y++ P++ Le+lv + ++ gi|1181030 203 APRGLKS---GDRTTWFVLFHGIAGS----GYFVLPVG-LEVLVEHGPLD 244 CS EEEEEEECCEETTE VieitDrgvripvp<-* V + +v+++++ gi|1181030 245 VSQWYLCQVFYNGR 258 DUF1965: domain 1 of 1, from 226 to 290: score -8.7, E = 0.051 CS SS-GGG-EEEEEEEEE--SS-GGG-EEEEEEETTEEESSHHHHHHHH *->FDaetLlPlGLYfksDvTGRDpSkWkLlGwLYNdkfYtttEEFReAy + lP GL + D+S+W L YN+ ++ + E+ A+ gi|1181030 226 --GYFVLPVGLEVLVEHGPLDVSQWYLCQVFYNGRYFPSIAELENAF 270 CS HSTT----.----TT--GGG--S--TTS-- wspgFvklkPnvdvdnGdWavtdqnGdvpp<-* + + v + q + v+ gi|1181030 271 VTKSLKVV---VV-------QKPQEDTVLG 290