-------------------------------------------------------------------------------- Domain name : PF04387.6_PTPLA Domain size : 168 Domain Description : Protein tyrosine phosphatase-like protein, PTPLA Domain gathering score : 25.0000 Domain trusted cutoff : 25.6000 Domain architecture : non-TM/SP [1 97], TM [98 177] -------------------------------------------------------------------------------- Example 1 gi|125524441|gb|EAY72555.1| hypothetical protein OsI_000402 [Oryza sativa (indica cultivar-group)] 646 (length) 523 646 .] (wrt seq) 1 168 [] (wrt HMM) No.of residues in non-TM/SP region : 60 [62%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- PTPLA Protein tyrosine phosphatase-like protei -19.5 1.9e-05 1 adh_short short chain dehydrogenase -2.7 2.1e-05 1 Epimerase NAD dependent epimerase/dehydratase fami -67.3 0.041 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PTPLA 1/1 523 646 .] 1 168 [] -19.5 1.9e-05 adh_short 1/1 49 205 .. 1 181 [] -2.7 2.1e-05 Epimerase 1/1 51 319 .. 1 286 [] -67.3 0.041 Alignments of top-scoring domains: PTPLA: domain 1 of 1, from 523 to 646: score -19.5, E = 1.9e-05 *->QtlAvlEilHsifGlVkSpvvttffQVsSRlfivwgiihsvpevqak s++ ++ Q Rl ++++ + gi|1255244 523 ----------SFL---------PLGQ---RL------EAACSDDK-- 539 psvvvfslllaWsitEIiRYsfYafn.llgqtaPyfLtWLRYtlFivLYP +++ +s++ + RYsf + ++ +g ++P++L WLRY++Fiv P gi|1255244 540 SHWSRPSMV-------VTRYSFHGMKeSFG-FTPSWLFWLRYSTFIVCFP 581 lGvtsElltvyaslpyveesgrfSvelP..........nklNisFdYvlf +G ++E++++y +lp+ e++ ++ + +++++k+++sF Y+++ gi|1255244 582 VGMVCEVVLIYIALPFM--------EMKaqqyqaseksDKWSFSFNYFYA 623 LiiaLmliYIPGfyqlYsHMiaQRrKvLkkgs<-* + m++ + aQ v+ + + gi|1255244 624 NLFF-MAS--------FATATAQVATVSSANK 646 adh_short: domain 1 of 1, from 49 to 205: score -2.7, E = 2.1e-05 CS EEEEECTTSSHHHHHHHHHHHHT.TCEEEEEESSH..HHHHHHHH.. *->GTvLiTGGtGGLGlavARwLvaeHGArhLvLvsRrGpdapgaaeLrr ++ GG++G+Gl++ R ++ + GA h++ ++R+ +++a + gi|1255244 49 EFIIQSGGASGIGLETSRVFAMR-GA-HVIIAARN---TEAASVV-- 88 CS ..HHHHHHTT EEEEEEE.TTTHHHHHHHHHHHHH.HHTSCCCEEEE-- iavaeLealG..AeVtvaacDVaDrdalaallaaipkaaegPLtgVVHaA + + + ++A+++v D+++ +++a ++ PL +++++A gi|1255244 89 --RKKIIEENpkAHIDVLKLDLSSLKSVRAFADQFN-SMNLPLNILINNA 135 CS --T-BSCGGGHHHHHHHHHHHHHTHHHHHHHHHHHHCHHHHCH TTEEE GvldDgvlesltperldrVlapKvdgAwhLheltrdlmikldr..geLda Gv +++ ++ ++ +a++ g ++L+ l++d+m++ +++g+ ++ gi|1255244 136 GVMF-CPFGLS-EDGVEMQFATNHLGHFLLTNLLLDNMKATAKstGIESR 183 CS EEEEEHGGGTS-TTTCHHHHHHHHHHHHHHHHHHHHHG FVlfSSaAGvlGspGQanYAAANAfLDaLAehRraeGL<-* +V+ SS+A +L + + L gi|1255244 184 IVNLSSVA----------------HLHTYPKGIEFDKL 205 Epimerase: domain 1 of 1, from 51 to 319: score -67.3, E = 0.041 CS EEEETTTSHHHHHHHHHHHHCTTEEEEEEEECTT-TGGGTCCCCTCC *->iLVTGgtGfiGsaLvrrLleeGyevivlDvlgrrrrseslntvridh i+ Gg+ iG + r+++ +G + v++ +r+ e++ +vr + gi|1255244 51 IIQSGGASGIGLETSRVFAMRGAH-----VIIAARNTEAASVVRKKI 92 CS G--.-- - - -..STEEEEE--TT-HHHHHHHHHHH T-SEEEE lyqidp..H.e.sktprvefvegDltdpdalerllaev.....qPDaVih +++ +p+ H + k +Dl+ +++++ ++ ++ + i+ gi|1255244 93 IEE-NPkaHiDvLK--------LDLSSLKSVRAFADQFnsmnlPLNILIN 133 CS --S---.HHHHH HSHHHHHHHH THHHHHHHHHHHHHTH...T lAAqsgGvdasf.edpaefiraN.....vlgtlnLLeaarkagvegae.. A+ + ++ ++ed +e+ a ++ +++l+t LL+ +++ + + gi|1255244 134 NAGVMF-CPFGLsEDGVEMQFATnhlghFLLTNLLLDNMKATAK--STgi 180 CS T-EEEEEEE.GGG GTSBSSSSCB-TTS--..--SSH....HHHHHHHH rkrfvfaSSasev..YGkvqagppitEttpltegPlsPtNegYaaaKlag r v++SS++++++Y+k+ + + + ++ + + + Y+ +Kla gi|1255244 181 ESRIVNLSSVAHLhtYPKGIEFDKLNDEKTY--DDKMA----YGQSKLAN 224 CS HHHHHHHHHH..HT-EEEEEEESEEESTT.S-TTSTTSHHHHHHHHHHTT erlvlayaraGvygldavilRlfNvyGPgdrgdpfvthvipalirrileg + ++ r l++++ l G ++ ++ +++ + e gi|1255244 225 ILHAKELSRR----LKGTVAVLVAGWGLV--AGLSGGGQWSLVVMAAAEP 268 CS SSS. .... .. ... .EEEET.SSSTST-EEEEEEHHHHHHH kpdg.adal.ev.......qae.eilllGDYTpdGtarRDflyVdDvarA k + a a+++++ +++ + ++++ lG + + gi|1255244 269 KLRWaANAArQLgvwlppgKIRsPPPDLG---------------REHRAS 303 CS HHHHHHHCTTTTEEEEES illalehpeaggevyNiG<-* + ++ + g+ + +G gi|1255244 304 VDILVPRRF--GRRVHCG 319 Revised version of example 1 gi|218187534|gb|EEC69961.1|hypothetical protein OsI_00420 [Oryza sativa Indica Group] 198 (length) Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PTPLA Protein tyrosine phosphatase-like protein, P 26.2 6.1e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PTPLA 1/1 63 194 .. 1 168 [] 26.2 6.1e-09 Alignments of top-scoring domains: PTPLA: domain 1 of 1, from 63 to 194: score 26.2, E = 6.1e-09 *->QtlAvlEilHsifGlVkSpvvttffQVsSRlfivwgiihsvpevqak s++ ++ Q Rl ++++ + gi|2181875 63 ----------SFL---------PLGQ---RL------EAACSDDK-- 79 psvvvfslllaWsitEIiRYsfYafn.llgqtaPyfLtWLRYtlFivLYP +++ +s++ + RYsf + ++ +g ++P++L WLRY++Fiv P gi|2181875 80 SHWSRPSMV-------VTRYSFHGMKeSFG-FTPSWLFWLRYSTFIVCFP 121 lGvtsElltvyaslpyveesgrfSvelP..........nklNisFdYvlf +G ++E++++y +lp+ e++ ++ + +++++k+++sF Y+++ gi|2181875 122 VGMVCEVVLIYIALPFM--------EMKaqqyqaseksDKWSFSFNYFYA 163 LiiaLmliYIPGfyqlYsHMiaQRrKvLkkgs<-* + m++ + ++l++++ia R+K L+k++ gi|2181875 164 NLFF-MASFATVYPVLFRYLIALRKKALAKAK 194