-------------------------------------------------------------------------------- Domain name : PF08510.4_PIG-P Domain size : 153 Domain Description : PIG-P Domain gathering score : -11.4000 Domain trusted cutoff : -8.7000 Domain architecture : TM/SP [1 91], non-TM/SP [92 208] -------------------------------------------------------------------------------- Example 1 gi|125533015|gb|EAY79580.1| hypothetical protein OsI_033539 [Oryza sativa (indica cultivar-group)] 899 (length) 764 894 .. (wrt seq) 1 153 [] (wrt HMM) No.of residues in non-TM/SP region : 39 [33%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- eIF2A Eukaryotic translation initiation fac 356.8 4.1e-104 1 PIG-P PIG-P 92.8 1.2e-24 1 RRM_1 RNA recognition motif. (a.k.a. RRM, R 28.9 2.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- eIF2A 1/1 407 607 .. 1 204 [] 356.8 4.1e-104 PIG-P 1/1 764 894 .. 1 153 [] 92.8 1.2e-24 RRM_1 1/1 63 141 .. 1 73 [] 28.9 2.1e-05 Alignments of top-scoring domains: eIF2A: domain 1 of 1, from 407 to 607: score 356.8, E = 4.1e-104 *->KsFFkaDkvqlkWNknGtyLLvlvsTdvDKtnkSYYGetnLYliglt K++F++++++++W+++G+yL+v+v+ +++Kt+kS+Y++++L++i+++ gi|1255330 407 KNLFSVSDCKMYWQNSGEYLAVQVD-RYTKTKKSTYTGFELFRIKER 452 ggpdevveLdkeGPKIhDvaWSpnskeFaVvyGymPapkitlFdlk...r ++p+ev+eLd++++KI+++aW+p++++FaV++G+ P p+i+++++k++++ gi|1255330 453 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDGPKPDISFYSMKtsnN 502 .gkgnvihslgeqprNTifwsPfGrlvllAGFGNLaGqiefYwDvqnnkk ++++++++l+ +++N++fwsP Gr++++AG+++++Gq+ef ++v+ +++ gi|1255330 503 iSRVSKLTTLKGKQANALFWSPGGRFIVFAGLKGFNGQLEF-YNVD-ELE 550 kiatfeasnatvceWsPdGryflTATTsPRlRVDNGfKIWhysGkLlykk ++at e+++at+++W+P+Gry++ A+Ts +++++NGf+IW++sGk lyk+ gi|1255330 551 TMATGEHFMATDIMWDPTGRYLASAVTS-VHEMENGFQIWSFSGKQLYKV 599 dfpsgdELyqv<-* ++ d+++q+ gi|1255330 600 SK---DHFFQF 607 PIG-P: domain 1 of 1, from 764 to 894: score 92.8, E = 1.2e-24 *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl +e yGFv++i+++ a Yl WA++P+++L+ lg+tYYP ++WAl gi|1255330 764 GSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWAL 810 AiPiylLvalifgyvvyflyNteVlTePL..........dSintIt.Dey A+P++lL a g+v+y N++ +P+ ++ +++ ++i++ +De+ gi|1255330 811 AMPSLLLEAAAQGMVLYMASNFLLAPAPTllghylrgtcSDIFCLLpDEF 860 srvdgeseasegedleqikiakstdgiyedqlmgpderktneiledeesi +r+ + + ge e++i gi|1255330 861 AREPAACGTATGE---------------------------------EKPI 877 ppvsDlpiseVnklLYl<-* + +sD++i+ +n+l+++ gi|1255330 878 EDISDISIDKINNLMFG 894 RRM_1: domain 1 of 1, from 63 to 141: score 28.9, E = 2.1e-05 CS EEEESET TTTHHHHHHHHHTTTSEEEE EEEEEE.STTTT *->lfVgNLp......pdtteedLkdlFskfGpies..ikivrDttretg + V NLp ++++++ e ++++ s++G i++++ ++ + +et+ gi|1255330 63 VVVDNLPvvppekFEKLENVIRKIYSQIGAIKEggLWMPVN--PETK 107 CS SEEEEEEEEESSHHHHHHHHHHHSSEEETTEEEE rskGfaFVeFedeedAekAldalnGkelggrelr<-* ++ G++F+e+ ++ +Ae A ++ nG++l+ + gi|1255330 108 KTYGYCFIEYNTPQEAELAREKTNGYKLDKSHIF 141 Example 2 gi|125575753|gb|EAZ17037.1| hypothetical protein OsJ_031246 [Oryza sativa (japonica cultivar-group)] 877 (length) 742 872 .. (wrt seq) 1 153 [] (wrt HMM) No.of residues in non-TM/SP region : 39 [33%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- eIF2A Eukaryotic translation initiation fac 270.4 4.2e-78 1 PIG-P PIG-P 92.8 1.2e-24 1 RRM_1 RNA recognition motif. (a.k.a. RRM, R 28.9 2.1e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- eIF2A 1/1 407 585 .. 1 204 [] 270.4 4.2e-78 PIG-P 1/1 742 872 .. 1 153 [] 92.8 1.2e-24 RRM_1 1/1 63 141 .. 1 73 [] 28.9 2.1e-05 Alignments of top-scoring domains: eIF2A: domain 1 of 1, from 407 to 585: score 270.4, E = 4.2e-78 *->KsFFkaDkvqlkWNknGtyLLvlvsTdvDKtnkSYYGetnLYliglt K++F++++++++W+++G+yL+v+v+ +++Kt+kS+Y++++L++i+++ gi|1255757 407 KNLFSVSDCKMYWQNSGEYLAVQVD-RYTKTKKSTYTGFELFRIKER 452 ggpdevveLdkeGPKIhDvaWSpnskeFaVvyGymPapkitlFdlk...r ++p+ev+eLd++++KI+++aW+p++++FaV++G+ P p+i+++++k++++ gi|1255757 453 DIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDGPKPDISFYSMKtsnN 502 .gkgnvihslgeqprNTifwsPfGrlvllAGFGNLaGqiefYwDvqnnkk ++++++++l+ +++N++fwsP Gr++++AG+++++Gq+ef ++v+ +++ gi|1255757 503 iSRVSKLTTLKGKQANALFWSPGGRFIVFAGLKGFNGQLEF-YNVD-ELE 550 kiatfeasnatvceWsPdGryflTATTsPRlRVDNGfKIWhysGkLlykk ++at e+++at+++W+P+G sGk lyk+ gi|1255757 551 TMATGEHFMATDIMWDPTG-----------------------SGKQLYKV 577 dfpsgdELyqv<-* ++ d+++q+ gi|1255757 578 SK---DHFFQF 585 PIG-P: domain 1 of 1, from 742 to 872: score 92.8, E = 1.2e-24 *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl +e yGFv++i+++ a Yl WA++P+++L+ lg+tYYP ++WAl gi|1255757 742 GSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWAL 788 AiPiylLvalifgyvvyflyNteVlTePL..........dSintIt.Dey A+P++lL a g+v+y N++ +P+ ++ +++ ++i++ +De+ gi|1255757 789 AMPSLLLEAAAQGMVLYMASNFLLAPAPTllghylrgtcSDIFCLLpDEF 838 srvdgeseasegedleqikiakstdgiyedqlmgpderktneiledeesi +r+ + + ge e++i gi|1255757 839 AREPAACGTATGE---------------------------------EKPI 855 ppvsDlpiseVnklLYl<-* + +sD++i+ +n+l+++ gi|1255757 856 EDISDISIDKINNLMFG 872 RRM_1: domain 1 of 1, from 63 to 141: score 28.9, E = 2.1e-05 CS EEEESET TTTHHHHHHHHHTTTSEEEE EEEEEE.STTTT *->lfVgNLp......pdtteedLkdlFskfGpies..ikivrDttretg + V NLp ++++++ e ++++ s++G i++++ ++ + +et+ gi|1255757 63 VVVDNLPvvppekFEKLENVIRKIYSQIGAIKEggLWMPVN--PETK 107 CS SEEEEEEEEESSHHHHHHHHHHHSSEEETTEEEE rskGfaFVeFedeedAekAldalnGkelggrelr<-* ++ G++F+e+ ++ +Ae A ++ nG++l+ + gi|1255757 108 KTYGYCFIEYNTPQEAELAREKTNGYKLDKSHIF 141 Revised version of Example 1 and 2 gi|218185049|gb|EEC67476.1| hypothetical protein OsI_34715 [Oryza sativa Indica Group] 163 (length) Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PIG-P PIG-P 92.8 1.2e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PIG-P 1/1 28 158 .. 1 153 [] 92.8 1.2e-24 Alignments of top-scoring domains: PIG-P: domain 1 of 1, from 28 to 158: score 92.8, E = 1.2e-24 *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl +e yGFv++i+++ a Yl WA++P+++L+ lg+tYYP ++WAl gi|2181850 28 GSSEAYGFVGSIAAVAAAAAYLAWAYLPEPWLRFLGVTYYPARHWAL 74 AiPiylLvalifgyvvyflyNteVlTePL..........dSintIt.Dey A+P++lL a g+v+y N++ +P+ ++ +++ ++i++ +De+ gi|2181850 75 AMPSLLLEAAAQGMVLYMASNFLLAPAPTllghylrgtcSDIFCLLpDEF 124 srvdgeseasegedleqikiakstdgiyedqlmgpderktneiledeesi +r+ + + ge e++i gi|2181850 125 AREPAACGTATGE---------------------------------EKPI 141 ppvsDlpiseVnklLYl<-* + +sD++i+ +n+l+++ gi|2181850 142 EDISDISIDKINNLMFG 158 Example 3 gi|170030092|ref|XP_001842924.1| conserved hypothetical protein [Culex quinquefasciatus]gi|167865930|gb|EDS29313.1| conserved hypothetical protein [Culex quinquefasciatus] 165 (length) 85 164 .. (wrt seq) 1 153 [] (wrt HMM) No.of residues in non-TM/SP region : 0 [0%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- Pcc1 Transcription factor Pcc1 66.8 7.9e-17 1 PIG-P PIG-P 47.9 2.7e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pcc1 1/1 8 84 .. 1 82 [] 66.8 7.9e-17 PIG-P 1/1 85 164 .. 1 153 [] 47.9 2.7e-11 Alignments of top-scoring domains: Pcc1: domain 1 of 1, from 8 to 84: score 66.8, E = 7.9e-17 CS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XX *->tltLkvPFpsereAeiAlrsLavDkeLkpslVrreltvsgtgsaknv +Lk+PFp++reAeiA+ +L+vD+e+k+s+ + l+ ++ n gi|1700300 8 VASLKIPFPTRREAEIAYDVLRVDAEPKRSFIEKTLKLED-----NQ 49 CS XXXXXXXXXXXXXXXXXXXXXXXX---S-----XX LvVrykAtdaRlLRvsvNSflDsLsLVvetmqefd<-* L V++++++a Rv+v Sf++sL L e ++++ gi|1700300 50 LLVEFRGEQAKNVRVGVGSFFESLILMPEHTPAPT 84 PIG-P: domain 1 of 1, from 85 to 164: score 47.9, E = 2.7e-11 *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl p r+iyGF l++l+ ++filY+lWAfiP+++L+ +g+tY+P+KY+Al gi|1700300 85 PSRAIYGFCLFLLFKTLFILYVLWAFIPTELLDGFGLTYLPDKYFAL 131 AiPiylLval.ifgyvvyflyNteVlTePLdSintItDeysrvdgeseas ++Pi+lLv l++f+++vy ++++ +++ D+++ gi|1700300 132 FMPILLLVGLtFFAFLVYPSLSLA-MMP---------DRDAWP------- 164 egedleqikiakstdgiyedqlmgpderktneiledeesippvsDlpise gi|1700300 - -------------------------------------------------- - VnklLYl<-* gi|1700300 - ------- - Example 4 gi|71022227|ref|XP_761344.1| hypothetical protein UM05197.1 [Ustilago maydis 521]gi|46097652|gb|EAK82885.1| hypothetical protein UM05197.1 [Ustilago maydis 521] 379 (length) 297 379 .] (wrt seq) 1 153 [] (wrt HMM) No.of residues in non-TM/SP region : 1 [1%(over non-TM/SP length)] Scores for sequence family classification: Model Description Score E-value N -------- ----------- ----- ------- --- CIA30 Complex I intermediate-associated prote 175.0 2.2e-49 1 PIG-P PIG-P 24.3 5.1e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CIA30 1/1 8 234 .. 1 210 [] 175.0 2.2e-49 PIG-P 1/1 297 379 .] 1 153 [] 24.3 5.1e-09 Alignments of top-scoring domains: CIA30: domain 1 of 1, from 8 to 234: score 175.0, E = 2.2e-49 *->fdF.......tqrqpeslddWravdDtvmGEGsStsnvailqispng ++F ++++++++ p+ dd++avdD+v+G G+S+s++ai+q+ p + gi|7102222 8 PLFapgpnprAPALPWRSDDFFAVDDRVRG-GTSHSHTAIVQFPPIS 53 .gtalFsGnLstenpgdgrerrrrGGFASvrtkDqprsfnfdpplDLseY +g ++FsG+L+t ++g+ +GFAS+ ++ + p+ L++ gi|7102222 54 rGELVFSGFLDTLTLGG-------AGFASQSST-------TCFPVTLNKQ 89 .fngieLrVrknGDpGr.....................rYkfnlrtedpf +f g++L V + + ++++++ ++ ++++++ + +++ f ++te p gi|7102222 90 dFVGLRLVV-R-KN-PNwqeptppygganpgggkapvtSFVFEIKTEEP- 135 lglteradgreqdglsYeadFdTkk..............ggewqtvkiPF ++r+dgr+q+ +++e++F +++ ++++ ++ + ++++ +++++ + gi|7102222 136 ---ERRPDGRRQSVIVWEWSFSIPQldgqeahslnlmqtNDDFWVFDSTW 182 sdFkptfRGrpvddap..pldpsrissiglllSKFeydGklnpdkqeGpF sdFkp++RGrpvd++ +++ p++ ++++l+ ++n+ q+GpF gi|7102222 183 SDFKPMYRGRPVDPDKagEFRPQDTREWSLMA-------RSNFQAQSGPF 225 eLeidsIka<-* L+++s++a gi|7102222 226 VLQLHSLSA 234 PIG-P: domain 1 of 1, from 297 to 379: score 24.3, E = 5.1e-09 *->pereiyGFvlyilsqlafilYllWAfiPdsvLhslgItYYPsKYWAl +e+yGF+l+i s+l++++++ WA+ Pd vLhs+gI YP++ WA gi|7102222 297 CAAEYYGFALFIFSTLLWVIWIAWALTPDTVLHSIGIGWYPNREWAF 343 AiPiylLvalifgyvvyflyNteVlTePLdSintItDeysrvdgesease +P+++L+a++ +y v++++N +T+ L +i ++t gi|7102222 344 LLPAWSLFAVLAVYAVFIGLNAK-STPELREIVNVT-------------- 378 gedleqikiakstdgiyedqlmgpderktneiledeesippvsDlpiseV gi|7102222 - -------------------------------------------------- - nklLYl<-* + gi|7102222 379 -----G 379