Biomolecular Function Discovery Division |
||
MS Cleaner Version 2.0
Experimental data used
to test the Version 2.0
0) Abbreviations:
SL - sequence ladder length (in residues)1) Experimental data from:
Data before cleaning |
Data after cleaning | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Cleaned spectra ready for interpretation |
Number of non-interpretable spectra not sent to Mascot |
|||||||||
Dataset |
Name of protein |
Number of spectra |
File size [MB] |
SL Length |
Intensity |
Cleaned spectra |
Number of spectra |
File size [MB] |
||
BSA |
2679 |
6324 |
3 |
100 |
1664 |
3607 |
1015 |
|||
3 |
15 |
390 |
2040 |
2289 |
||||||
3 |
20 |
490 |
2362 |
2189 |
||||||
3 |
25 |
601 |
2667 |
2078 |
||||||
3 |
30 |
688 |
2890 |
1991 |
||||||
4 |
100 |
940 |
2756 |
1739 |
||||||
4 |
15 |
260 |
1537 |
2419 |
||||||
4 |
20 |
321 |
1792 |
2358 |
||||||
4 |
25 |
380 |
2005 |
2299 |
||||||
4 |
30 |
441 |
2226 |
2238 |
||||||
5 |
100 |
593 |
2155 |
2086 |
||||||
5 |
15 |
174 |
1122 |
2505 |
||||||
5 |
20 |
232 |
1409 |
2447 |
||||||
5 |
25 |
281 |
1618 |
2398 |
||||||
5 |
30 |
313 |
1755 |
2366 |
||||||
ADH |
2325 |
4177 |
3 |
100 |
1446 |
2321 |
879 |
|||
3 |
15 |
269 |
896 |
2056 |
||||||
3 |
20 |
347 |
1123 |
1978 |
||||||
3 |
25 |
440 |
1339 |
1885 |
||||||
3 |
30 |
697 |
1532 |
1628 |
||||||
4 |
100 |
902 |
1781 |
1423 |
||||||
4 |
15 |
173 |
602 |
2152 |
||||||
4 |
20 |
216 |
744 |
2109 |
||||||
4 |
25 |
271 |
901 |
2054 |
||||||
4 |
30 |
325 |
1064 |
2000 |
||||||
5 |
100 |
594 |
1359 |
1731 |
||||||
5 |
15 |
94 |
336 |
2231 |
||||||
5 |
20 |
125 |
464 |
2200 |
||||||
5 |
25 |
145 |
533 |
2180 |
||||||
5 |
30 |
186 |
699 |
2139 |
||||||
Transferin |
2608 |
5728 |
3 |
100 |
1587 |
3200 |
1021 |
|||
3 |
15 |
373 |
1752 |
2235 |
||||||
3 |
20 |
485 |
2103 |
2123 |
||||||
3 |
25 |
568 |
2341 |
2040 |
||||||
3 |
30 |
639 |
2517 |
1969 |
||||||
4 |
100 |
864 |
2391 |
1744 |
||||||
4 |
15 |
231 |
1224 |
2377 |
||||||
4 |
20 |
298 |
1500 |
2310 |
||||||
4 |
25 |
360 |
1728 |
2248 |
||||||
4 |
30 |
414 |
1907 |
2194 |
||||||
5 |
100 |
540 |
1844 |
2068 |
||||||
5 |
15 |
164 |
951 |
2444 |
||||||
5 |
20 |
194 |
1070 |
2414 |
||||||
5 |
25 |
245 |
1316 |
2363 |
||||||
5 |
30 |
286 |
1491 |
2322 |
Data before cleaning |
Data after cleaning with Sequence Ladder length 4, and Intensity 20% |
||||||
Cleaned spectra ready for interpretation |
Bad spectra not sent to Mascot |
||||||
Dataset |
Name of protein |
Number of spectra |
File size [MB] |
Cleaned data file |
Number of spectra |
File size [MB] |
|
α-amylase |
10108 |
51020 |
4036 |
24491 |
6072 |
||
10184 |
54712 |
5070 |
30106 |
5114 |
|||
Amylogucosidase |
10030 |
40453 |
2082 |
13278 |
7948 |
||
9870 |
44653 |
2702 |
17353 |
7168 |
|||
Apo-transferrin |
10032 |
47833 |
3702 |
22637 |
6330 |
||
10090 |
52363 |
4730 |
28688 |
5360 |
|||
β-galactidase |
10324 |
70869 |
5362 |
43513 |
4962 |
||
10368 |
74268 |
5920 |
47035 |
4448 |
|||
Carbonic anhydrase |
9946 |
32553 |
964 |
4376 |
8982 |
||
9534 |
33781 |
1328 |
5987 |
8206 |
|||
Catalase |
10098 |
48447 |
3306 |
21188 |
6792 |
||
10034 |
51879 |
4064 |
25812 |
5970 |
|||
Phosphorylase B |
10118 |
49440 |
3694 |
22965 |
6424 |
||
10096 |
53536 |
4648 |
28879 |
5448 |
|||
Glutamic dehydrogenase |
10006 |
38166 |
2046 |
11160 |
7960 |
||
9886 |
41582 |
2718 |
14430 |
7168 |
|||
Glutathione transferase |
10022 |
43787 |
2842 |
15589 |
7180 |
||
10156 |
50330 |
3946 |
22328 |
6210 |
|||
Immunoglobulin γ |
10330 |
72607 |
5960 |
48107 |
4370 |
||
10334 |
75633 |
6504 |
52060 |
3830 |
|||
Lactic dehydrogenase |
10286 |
60131 |
4814 |
34522 |
5472 |
||
10250 |
66981 |
6134 |
43738 |
4116 |
|||
Lactoperoxidase |
10242 |
55687 |
3880 |
27021 |
6362 |
||
10402 |
65984 |
5024 |
36709 |
5378 |
|||
Myoglobin |
9958 |
36697 |
1452 |
7645 |
8506 |
||
9744 |
37140 |
1868 |
9068 |
7876 |