Before cleaning				BSA cleaned 95	After cleaning
Score	Expect	Peptide		Dta files	Score	Expect	Peptide		Total Hits	70
37	4.8	K.GACLLPK.I		100fmol_BSA_run1.744.744.1.dta	37	4.5	K.GACLLPK.I		Score higher	47
n/a	n/a			100fmol_BSA_run1.663.663.1.dta	31	21	K.LVTDLTK.V		Score equal	5
38	4.3	K.ATEEQLK.T		100fmol_BSA_run1.234.234.2.dta	39	3.3	K.ATEEQLK.T		Score lower	13
(35)	8.2	K.ATEEQLK.T		100fmol_BSA_run1.228.228.2.dta	(35)	7.5	K.ATEEQLK.T		found only after cleaning	5
(34)	9.5	R.LSQKFPK.A		100fmol_BSA_run1.375.375.1.dta	(35)	8.9	R.LSQKFPK.A		lost after cleaning	0
n/a	n/a			100fmol_BSA_run1.366.366.1.dta	(32)	15	R.LSQKFPK.A
(36)	7.4	R.LSQKFPK.A		100fmol_BSA_run1.369.369.2.dta	(35)	9.4	R.LSQKFPK.A
(35)	8.7	R.LSQKFPK.A		100fmol_BSA_run1.360.360.2.dta	(35)	8.2	R.LSQKFPK.A
40	2.6	R.LSQKFPK.A		100fmol_BSA_run1.420.420.2.dta	39	3.5	R.LSQKFPK.A
37	4.2	K.DDSPDLPK.L		100fmol_BSA_run1.546.546.2.dta	36	6.2	K.DDSPDLPK.L
(40)	2.4	K.AEFVEVTK.L		100fmol_BSA_run1.765.765.1.dta	(45)	0.74	K.AEFVEVTK.L
41	1.8	K.AEFVEVTK.L		100fmol_BSA_run1.768.768.2.dta	48	0.36	K.AEFVEVTK.L
(36)	5.7	K.AEFVEVTK.L		100fmol_BSA_run1.762.762.2.dta	(42)	1.3	K.AEFVEVTK.L
39	3.1	K.YLYEIAR.R		100fmol_BSA_run1.1170.1170.2.dta	48	0.37	K.YLYEIAR.R
37	4.3	K.DLGEEHFK.G		100fmol_BSA_run1.576.576.2.dta	43	1.3	K.DLGEEHFK.G
n/a	n/a			100fmol_BSA_run1.561.561.2.dta	(33)	13	K.DLGEEHFK.G
41	1.8	R.EKVLTSSAR.Q		100fmol_BSA_run1.216.216.2.dta	52	0.16	R.EKVLTSSAR.Q
(35)	7.8	R.EKVLTSSAR.Q		100fmol_BSA_run1.210.210.2.dta	(39)	3.3	R.EKVLTSSAR.Q
51	0.18	K.LVVSTQTALA.-		100fmol_BSA_run1.1383.1383.2.dta	53	0.1	K.LVVSTQTALA.-
(35)	7.6	K.LVVSTQTALA.-		100fmol_BSA_run1.1503.1503.2.dta	(38)	3.2	K.LVVSTQTALA.-
44	0.87	K.QTALVELLK.H		100fmol_BSA_run1.1722.1725.2.dta	42	1.3	K.QTALVELLK.H
31	14	R.NECFLSHK.D		100fmol_BSA_run1.492.492.2.dta	32	13	R.NECFLSHK.D
n/a	n/a			100fmol_BSA_run1.348.348.1.dta	31	15	K.QNCDQFEK.L
50	0.18	K.SHCIAEVEK.D		100fmol_BSA_run1.327.327.2.dta	57	0.038	K.SHCIAEVEK.D
(30)	18	K.SHCIAEVEK.D		100fmol_BSA_run1.315.315.2.dta	(37)	3.7	K.SHCIAEVEK.D
51	0.16	K.CCTESLVNR.R		100fmol_BSA_run1.531.531.2.dta	51	0.14	K.CCTESLVNR.R
58	0.033	K.KQTALVELLK.H		100fmol_BSA_run1.1251.1251.2.dta	64	0.0071	K.KQTALVELLK.H
(39)	2.5	K.KQTALVELLK.H		100fmol_BSA_run1.1260.1260.1.dta	(39)	2.1	K.KQTALVELLK.H
(50)	0.19	K.KQTALVELLK.H		100fmol_BSA_run1.1245.1245.2.dta	(55)	0.065	K.KQTALVELLK.H
(42)	1.3	K.LVNELTEFAK.T		100fmol_BSA_run1.1527.1530.2.dta	(44)	0.7	K.LVNELTEFAK.T
49	0.25	K.LVNELTEFAK.T		100fmol_BSA_run1.1629.1629.2.dta	51	0.15	K.LVNELTEFAK.T
37	3.7	R.CCTKPESER.M		100fmol_BSA_run1.102.102.2.dta	35	5.1	R.CCTKPESER.M
40	1.7	R.DTHKSEIAHR.F		100fmol_BSA_run1.99.99.2.dta	42	1.3	R.DTHKSEIAHR.F
(34)	8.3	R.FKDLGEEHFK.G		100fmol_BSA_run1.648.648.1.dta	(33)	11	R.FKDLGEEHFK.G
(46)	0.51	R.FKDLGEEHFK.G		100fmol_BSA_run1.639.639.2.dta	58	0.032	R.FKDLGEEHFK.G
47	0.36	R.FKDLGEEHFK.G		100fmol_BSA_run1.624.624.2.dta	(57)	0.035	R.FKDLGEEHFK.G
34	6.3	R.HPEYAVSVLLR.L		100fmol_BSA_run1.1404.1404.2.dta	44	0.76	R.HPEYAVSVLLR.L
47	0.38	K.ECCDKPLLEK.S		100fmol_BSA_run1.468.468.2.dta	45	0.64	K.ECCDKPLLEK.S
(37)	4.1	K.HLVDEPQNLIK.Q		100fmol_BSA_run1.981.981.1.dta	(41)	1.4	K.HLVDEPQNLIK.Q
(42)	1.1	K.HLVDEPQNLIK.Q		100fmol_BSA_run1.966.966.2.dta	45	0.55	K.HLVDEPQNLIK.Q
46	0.46	K.HLVDEPQNLIK.Q		100fmol_BSA_run1.1074.1074.2.dta	(45)	0.56	K.HLVDEPQNLIK.Q
71	0.0013	K.TVMENFVAFVGK.C		100fmol_BSA_run1.2313.2313.2.dta	78	0.00029	K.TVMENFVAFVGK.C
50	0.16	K.SLHTLFGDELCK.V		100fmol_BSA_run1.1476.1476.2.dta	61	0.013	K.SLHTLFGDELCK.V
(54)	0.07	R.RHPEYAVSVLLR.L		100fmol_BSA_run1.1179.1179.3.dta	(53)	0.084	R.RHPEYAVSVLLR.L
(61)	0.013	R.RHPEYAVSVLLR.L		100fmol_BSA_run1.1119.1119.3.dta	(62)	0.011	R.RHPEYAVSVLLR.L
66	0.0037	R.RHPEYAVSVLLR.L		100fmol_BSA_run1.1173.1173.2.dta	75	0.0005	R.RHPEYAVSVLLR.L
(58)	0.024	R.RHPEYAVSVLLR.L		100fmol_BSA_run1.1107.1107.3.dta	(68)	0.0026	R.RHPEYAVSVLLR.L
73	0.0009	K.YICDNQDTISSK.L		100fmol_BSA_run1.567.567.2.dta	66	0.0039	K.YICDNQDTISSK.L
59	0.021	K.TCVADESHAGCEK.S		100fmol_BSA_run1.189.189.2.dta	74	0.00069	K.TCVADESHAGCEK.S
75	0.00048	K.VPQVSTPTLVEVSR.S		100fmol_BSA_run1.1398.1398.2.dta	83	7.9e-05	K.VPQVSTPTLVEVSR.S
60	0.016	K.LKECCDKPLLEK.S		100fmol_BSA_run1.459.459.2.dta	61	0.015	K.LKECCDKPLLEK.S
(42)	1.1	K.LKECCDKPLLEK.S		100fmol_BSA_run1.456.456.3.dta	(52)	0.11	K.LKECCDKPLLEK.S
76	0.00038	K.LGEYGFQNELIVR.Y		100fmol_BSA_run1.1902.1902.2.dta	77	0.0003	K.LGEYGFQNELIVR.Y
51	0.13	K.LKHLVDEPQNLIK.Q		100fmol_BSA_run1.906.906.2.dta	(43)	0.87	K.LKHLVDEPQNLIK.Q
(42)	1.2	K.LKHLVDEPQNLIK.Q		100fmol_BSA_run1.909.909.3.dta	(47)	0.36	K.LKHLVDEPQNLIK.Q
(50)	0.19	K.LKHLVDEPQNLIK.Q		100fmol_BSA_run1.900.900.2.dta	61	0.013	K.LKHLVDEPQNLIK.Q
(43)	0.97	K.LKHLVDEPQNLIK.Q		100fmol_BSA_run1.897.897.3.dta	(44)	0.72	K.LKHLVDEPQNLIK.Q
n/a	n/a			100fmol_BSA_run1.1029.1029.2.dta	42	0.89	K.DDPHACYSTVFDK.L
43	0.79	K.LKPDPNTLCDEFK.A		100fmol_BSA_run1.1191.1191.2.dta	46	0.4	K.LKPDPNTLCDEFK.A
(30)	15	K.LKPDPNTLCDEFK.A		100fmol_BSA_run1.1182.1182.2.dta	(31)	11	K.LKPDPNTLCDEFK.A
(45)	0.42	R.KVPQVSTPTLVEVSR.S		100fmol_BSA_run1.1146.1146.1.dta	(51)	0.12	R.KVPQVSTPTLVEVSR.S
94	5.5e-06	R.KVPQVSTPTLVEVSR.S		100fmol_BSA_run1.1134.1137.2.dta	82	9.7e-05	R.KVPQVSTPTLVEVSR.S
(74)	0.00056	R.NECFLSHKDDSPDLPK.L		100fmol_BSA_run1.831.831.2.dta	93	6.4e-06	R.NECFLSHKDDSPDLPK.L
(32)	7.8	R.NECFLSHKDDSPDLPK.L		100fmol_BSA_run1.840.840.3.dta	(33)	6.4	R.NECFLSHKDDSPDLPK.L
78	0.00022	R.NECFLSHKDDSPDLPK.L		100fmol_BSA_run1.825.825.2.dta	(75)	0.00044	R.NECFLSHKDDSPDLPK.L
33	6.1	K.LFTFHADICTLPDTEK.Q		100fmol_BSA_run1.1785.1785.3.dta	34	5.7	K.LFTFHADICTLPDTEK.Q
63	0.0058	K.DAIPENLPPLTADFAEDK.D		100fmol_BSA_run1.2241.2241.2.dta	77	0.00027	K.DAIPENLPPLTADFAEDK.D
(50)	0.12	K.DAIPENLPPLTADFAEDK.D		100fmol_BSA_run1.2232.2232.2.dta	(66)	0.0031	K.DAIPENLPPLTADFAEDK.D
73	0.00062	R.RHPYFYAPELLYYANK.Y		100fmol_BSA_run1.1809.1809.2.dta	77	0.00024	R.RHPYFYAPELLYYANK.Y
(66)	0.0033	R.RHPYFYAPELLYYANK.Y		100fmol_BSA_run1.1803.1803.3.dta	(67)	0.0027	R.RHPYFYAPELLYYANK.Y