Transferin	Before cleaning				Transferin after cleaning
Dta files	Score	Expect	Peptide		Dta files	Score	Expect	Peptide			Total Hits	68
	n/a	n/a			100fmol_Apo_trans_run1.1380.1380.1.dta	30	26	K.DLLFK.D			Score higher	48
	n/a	n/a			100fmol_Apo_trans_run1.1371.1371.1.dta	(30)	26	K.DLLFK.D			Score equal	3
100fmol_Apo_trans_run1.567.567.1.dta	(30)	26	K.DSAHGFLK.V		100fmol_Apo_trans_run1.567.567.1.dta	(31)	20	K.DSAHGFLK.V			Score lower	6
100fmol_Apo_trans_run1.573.573.2.dta	33	13	K.DSAHGFLK.V		100fmol_Apo_trans_run1.573.573.2.dta	(34)	9.4	K.DSAHGFLK.V			found only after cleaning	8
100fmol_Apo_trans_run1.564.564.2.dta	(32)	15	K.DSAHGFLK.V		100fmol_Apo_trans_run1.564.564.2.dta	42	1.5	K.DSAHGFLK.V			lost after cleaning	3
	n/a	n/a			100fmol_Apo_trans_run1.219.219.2.dta	(30)	23	R.KPVDEYK.D
	n/a	n/a			100fmol_Apo_trans_run1.210.210.2.dta	32	15	R.KPVDEYK.D
100fmol_Apo_trans_run1.105.111.2.dta	44	1.1	K.SCHTAVGR.T		100fmol_Apo_trans_run1.105.111.2.dta	44	0.96	K.SCHTAVGR.T
100fmol_Apo_trans_run1.582.582.2.dta	(35)	7.2	R.DDTVCLAK.L		100fmol_Apo_trans_run1.582.582.2.dta	(34)	8.6	R.DDTVCLAK.L
100fmol_Apo_trans_run1.570.570.2.dta	40	2.3	R.DDTVCLAK.L		100fmol_Apo_trans_run1.570.570.2.dta	39	3.1	R.DDTVCLAK.L
100fmol_Apo_trans_run1.192.192.1.dta	(31)	18	R.APNHAVVTR.K		100fmol_Apo_trans_run1.192.192.1.dta	(33)	12	R.APNHAVVTR.K
100fmol_Apo_trans_run1.189.189.2.dta	(64)	0.0083	R.APNHAVVTR.K		100fmol_Apo_trans_run1.189.189.2.dta	(67)	0.0048	R.APNHAVVTR.K
100fmol_Apo_trans_run1.183.183.2.dta	66	0.005	R.APNHAVVTR.K		100fmol_Apo_trans_run1.183.183.2.dta	67	0.0046	R.APNHAVVTR.K
100fmol_Apo_trans_run1.252.252.2.dta	(39)	2.7	R.APNHAVVTR.K		100fmol_Apo_trans_run1.252.252.2.dta	(41)	1.8	R.APNHAVVTR.K
100fmol_Apo_trans_run1.954.954.2.dta	67	0.0048	K.DGAGDVAFVK.H		100fmol_Apo_trans_run1.954.954.2.dta	(73)	0.001	K.DGAGDVAFVK.H
100fmol_Apo_trans_run1.942.942.2.dta	(60)	0.02	K.DGAGDVAFVK.H		100fmol_Apo_trans_run1.942.942.2.dta	77	0.0004	K.DGAGDVAFVK.H
100fmol_Apo_trans_run1.1011.1011.2.dta	(55)	0.06	K.DGAGDVAFVK.H		100fmol_Apo_trans_run1.1011.1011.2.dta	(67)	0.0042	K.DGAGDVAFVK.H
100fmol_Apo_trans_run1.1194.1194.1.dta	(31)	15	K.ASYLDCIR.A			n/a	n/a
	n/a	n/a			100fmol_Apo_trans_run1.81.81.2.dta	30	20	K.DKEACVHK.I
100fmol_Apo_trans_run1.1191.1191.2.dta	52	0.1	K.ASYLDCIR.A		100fmol_Apo_trans_run1.1191.1191.2.dta	53	0.095	K.ASYLDCIR.A
100fmol_Apo_trans_run1.1185.1185.2.dta	(40)	1.6	K.ASYLDCIR.A		100fmol_Apo_trans_run1.1185.1185.2.dta	(42)	1.1	K.ASYLDCIR.A
100fmol_Apo_trans_run1.1119.1119.2.dta	42	1.2	K.YLGEEYVK.A		100fmol_Apo_trans_run1.1119.1119.2.dta	(49)	0.24	K.YLGEEYVK.A
100fmol_Apo_trans_run1.1104.1104.2.dta	(40)	2.1	K.YLGEEYVK.A		100fmol_Apo_trans_run1.1104.1104.2.dta	53	0.099	K.YLGEEYVK.A
100fmol_Apo_trans_run1.129.129.2.dta	44	0.92	K.KSCHTGLGR.S		100fmol_Apo_trans_run1.129.129.2.dta	46	0.48	K.KSCHTGLGR.S
100fmol_Apo_trans_run1.816.819.2.dta	39	2.1	K.KASYLDCIR.A		100fmol_Apo_trans_run1.816.819.2.dta	43	0.92	K.KASYLDCIR.A
100fmol_Apo_trans_run1.135.135.1.dta	(38)	3.1	K.HQTVPQNTGGK.N		100fmol_Apo_trans_run1.135.135.1.dta	(36)	4.6	K.HQTVPQNTGGK.N
100fmol_Apo_trans_run1.123.123.2.dta	39	2.2	K.HQTVPQNTGGK.N		100fmol_Apo_trans_run1.123.123.2.dta	45	0.54	K.HQTVPQNTGGK.N
100fmol_Apo_trans_run1.1251.1251.1.dta	(42)	1.1	K.DSGFQMNQLR.G		100fmol_Apo_trans_run1.1251.1251.1.dta	(45)	0.62	K.DSGFQMNQLR.G
100fmol_Apo_trans_run1.396.396.2.dta	(37)	3.2	K.WCALSHHER.L		100fmol_Apo_trans_run1.396.396.2.dta	49	0.23	K.WCALSHHER.L
100fmol_Apo_trans_run1.1248.1248.2.dta	50	0.19	K.DSGFQMNQLR.G		100fmol_Apo_trans_run1.1248.1248.2.dta	57	0.033	K.DSGFQMNQLR.G
100fmol_Apo_trans_run1.1302.1302.2.dta	(48)	0.31	K.DSGFQMNQLR.G		100fmol_Apo_trans_run1.1302.1302.2.dta	(53)	0.099	K.DSGFQMNQLR.G
100fmol_Apo_trans_run1.390.390.2.dta	45	0.61	K.WCALSHHER.L		100fmol_Apo_trans_run1.390.390.2.dta	(47)	0.36	K.WCALSHHER.L
100fmol_Apo_trans_run1.1215.1218.2.dta	(34)	7.2	K.DSGFQMNQLR.G		100fmol_Apo_trans_run1.1215.1218.2.dta	(36)	4.3	K.DSGFQMNQLR.G
100fmol_Apo_trans_run1.711.711.2.dta	(48)	0.27	K.DSGFQMNQLR.G + Oxidation (M)		100fmol_Apo_trans_run1.711.711.2.dta	(57)	0.035	K.DSGFQMNQLR.G + Oxidation (M)
100fmol_Apo_trans_run1.1521.1521.1.dta	(33)	8.9	K.SASDLTWDNLK.G		100fmol_Apo_trans_run1.1521.1521.1.dta	(37)	4.4	K.SASDLTWDNLK.G
100fmol_Apo_trans_run1.1503.1503.2.dta	67	0.0044	K.SASDLTWDNLK.G		100fmol_Apo_trans_run1.1503.1503.2.dta	70	0.0019	K.SASDLTWDNLK.G
100fmol_Apo_trans_run1.1563.1563.2.dta	(53)	0.1	K.SASDLTWDNLK.G		100fmol_Apo_trans_run1.1563.1563.2.dta	(57)	0.038	K.SASDLTWDNLK.G
100fmol_Apo_trans_run1.1053.1053.1.dta	(43)	0.98	K.HSTIFENLANK.A		100fmol_Apo_trans_run1.1053.1053.1.dta	(43)	1.1	K.HSTIFENLANK.A
100fmol_Apo_trans_run1.1098.1098.2.dta	(57)	0.036	K.HSTIFENLANK.A		100fmol_Apo_trans_run1.1098.1098.2.dta	(56)	0.055	K.HSTIFENLANK.A
100fmol_Apo_trans_run1.1041.1041.2.dta	(71)	0.0015	K.HSTIFENLANK.A		100fmol_Apo_trans_run1.1041.1041.2.dta	(69)	0.0024	K.HSTIFENLANK.A
100fmol_Apo_trans_run1.1023.1026.2.dta	72	0.0013	K.HSTIFENLANK.A		100fmol_Apo_trans_run1.1023.1026.2.dta	71	0.0014	K.HSTIFENLANK.A
100fmol_Apo_trans_run1.1221.1221.2.dta	(47)	0.36	K.EFQLFSSPHGK.D		100fmol_Apo_trans_run1.1221.1221.2.dta	(51)	0.14	K.EFQLFSSPHGK.D
100fmol_Apo_trans_run1.1209.1209.2.dta	61	0.015	K.EFQLFSSPHGK.D			n/a	n/a
	n/a	n/a			100fmol_Apo_trans_run1.1227.1227.3.dta	(31)	16	K.EFQLFSSPHGK.D
100fmol_Apo_trans_run1.1278.1278.2.dta	(52)	0.11	K.EFQLFSSPHGK.D		100fmol_Apo_trans_run1.1278.1278.2.dta	53	0.11	K.EFQLFSSPHGK.D
100fmol_Apo_trans_run1.1035.1035.2.dta	55	0.054	K.CDEWSVNSVGK.I		100fmol_Apo_trans_run1.1035.1035.2.dta	56	0.05	K.CDEWSVNSVGK.I
100fmol_Apo_trans_run1.1092.1095.2.dta	(36)	5	K.CDEWSVNSVGK.I			n/a	n/a
100fmol_Apo_trans_run1.1434.1437.2.dta	36	4.3	K.EGYYGYTGAFR.C		100fmol_Apo_trans_run1.1434.1437.2.dta	43	0.81	K.EGYYGYTGAFR.C
100fmol_Apo_trans_run1.486.486.1.dta	(35)	5.6	R.WCAVSEHEATK.C		100fmol_Apo_trans_run1.486.486.1.dta	(36)	4.9	R.WCAVSEHEATK.C
100fmol_Apo_trans_run1.480.480.2.dta	(51)	0.15	R.WCAVSEHEATK.C		100fmol_Apo_trans_run1.480.480.2.dta	(56)	0.047	R.WCAVSEHEATK.C
100fmol_Apo_trans_run1.465.465.2.dta	57	0.035	R.WCAVSEHEATK.C		100fmol_Apo_trans_run1.465.465.2.dta	64	0.0072	R.WCAVSEHEATK.C
100fmol_Apo_trans_run1.837.837.2.dta	(50)	0.17	K.KDSGFQMNQLR.G		100fmol_Apo_trans_run1.837.837.2.dta	(53)	0.097	K.KDSGFQMNQLR.G
100fmol_Apo_trans_run1.831.831.2.dta	59	0.021	K.KDSGFQMNQLR.G		100fmol_Apo_trans_run1.831.831.2.dta	60	0.018	K.KDSGFQMNQLR.G
100fmol_Apo_trans_run1.1971.1971.2.dta	54	0.066	K.DYELLCLDGTR.K		100fmol_Apo_trans_run1.1971.1971.2.dta	67	0.0034	K.DYELLCLDGTR.K
100fmol_Apo_trans_run1.1125.1125.2.dta	77	0.00038	K.KSASDLTWDNLK.G		100fmol_Apo_trans_run1.1125.1125.2.dta	80	0.00019	K.KSASDLTWDNLK.G
100fmol_Apo_trans_run1.1059.1059.2.dta	59	0.02	K.SVIPSDGPSVACVK.K		100fmol_Apo_trans_run1.1059.1059.2.dta	62	0.012	K.SVIPSDGPSVACVK.K
100fmol_Apo_trans_run1.1548.1548.2.dta	96	4e-06	K.CSTSSLLEACTFR.R		100fmol_Apo_trans_run1.1548.1548.2.dta	97	3.5e-06	K.CSTSSLLEACTFR.R
100fmol_Apo_trans_run1.1572.1575.2.dta	94	7e-06	R.FDEFFSEGCAPGSK.K		100fmol_Apo_trans_run1.1572.1575.2.dta	96	3.8e-06	R.FDEFFSEGCAPGSK.K
100fmol_Apo_trans_run1.504.504.3.dta	72	0.0011	R.KPVEEYANCHLAR.A		100fmol_Apo_trans_run1.504.504.3.dta	(72)	0.0011	R.KPVEEYANCHLAR.A
100fmol_Apo_trans_run1.498.501.2.dta	(63)	0.0079	R.KPVEEYANCHLAR.A		100fmol_Apo_trans_run1.498.501.2.dta	(74)	0.00064	R.KPVEEYANCHLAR.A
100fmol_Apo_trans_run1.555.555.2.dta	(42)	0.93	R.KPVEEYANCHLAR.A		100fmol_Apo_trans_run1.555.555.2.dta	(43)	0.82	R.KPVEEYANCHLAR.A
100fmol_Apo_trans_run1.495.495.3.dta	(67)	0.0032	R.KPVEEYANCHLAR.A		100fmol_Apo_trans_run1.495.495.3.dta	75	0.00054	R.KPVEEYANCHLAR.A
100fmol_Apo_trans_run1.633.633.2.dta	58	0.022	K.DCHLAQVPSHTVVAR.S		100fmol_Apo_trans_run1.633.633.2.dta	69	0.0019	K.DCHLAQVPSHTVVAR.S
100fmol_Apo_trans_run1.642.642.3.dta	(50)	0.15	K.DCHLAQVPSHTVVAR.S		100fmol_Apo_trans_run1.642.642.3.dta	(52)	0.087	K.DCHLAQVPSHTVVAR.S
100fmol_Apo_trans_run1.1407.1407.2.dta	72	0.0011	K.LCMGSGLNLCEPNNK.E		100fmol_Apo_trans_run1.1407.1407.2.dta	71	0.0012	K.LCMGSGLNLCEPNNK.E
100fmol_Apo_trans_run1.918.918.2.dta	74	0.00052	K.IECVSAETTEDCIAK.I		100fmol_Apo_trans_run1.918.918.2.dta	78	0.00024	K.IECVSAETTEDCIAK.I
	n/a	n/a			100fmol_Apo_trans_run1.384.384.3.dta	(32)	8	R.EGTCPEAPTDECKPVK.W
100fmol_Apo_trans_run1.375.378.2.dta	38	2.5	R.EGTCPEAPTDECKPVK.W		100fmol_Apo_trans_run1.375.378.2.dta	45	0.45	R.EGTCPEAPTDECKPVK.W